Jalview Online Training videos
The exercises demonstrated in these videos can be found in the Jalview manual.
The manual can be viewed on your browser or downloaded from the documentation page on the website.
The URLs featured in the videos are: https://www.jalview.org/tutorial/alignment.fa
(A) Getting Started playlist
Video 1: What is Jalview multiple sequence alignment software?
Video 2: Navigating the Jalview interface
Video 3: How to launch Jalview on your computer - currently being updated
The download section includes videos showing how to install Jalview on Windows, Mac, Linux, unix and other platforms.
Video 4: Loading sequences and alignments into Jalview
Video 5: Saving sequence alignments and projects in Jalview
Video 6: Jalview’s context menus
(B) Selecting and Editing Sequences playlist
Video 7: Selecting residues, sequences and columns in Jalview
Video 8: Selecting and exporting groups in sequence alignments using Jalview
Video 9: Reordering and hiding regions in sequence alignment using Jalview
Video 10: Editing gaps in alignments using Jalview
(C) Colour, Appearance and Figure Generation playlist
Video 11: Colouring sequence residues and alignments using Jalview
Video 12: Customising the appearance of the Jalview alignment window for figure generation
Video 13: Exporting data and saving images in Jalview
(D) Analysis and Annotation playlist
Video 14: Multiple sequence alignment and analysis with Jalview
Video 15: Principal components analysis of alignments in Jalview
Video 16: Calculating and displaying trees in Jalview
Video 17: Accessing Jmol and UCSF Chimera 3D molecular structure viewers in Jalview
Video 18: Secondary structure prediction of proteins in Jalview
Video 19: Protein disorder predictors in Jalview
(E) Features and Annotation playlist
Video 20: Displaying sequence features in Jalview
Video 21: Annotation rows in Jalview
These videos are hosted on our Jalview Online Training YouTube channel.