Length: 1 day
Location: Basel Biozentrum, U. Basel, Switzerland

A one day course hosted by the Schwede group, based in the Biozentrum at the University of Basel.

The program for this course is as follows:

Session 1. Introduction to Jalview.

  • starting the application
  • importing alignments
  • basic editing and creating figures.

Recommended for anyone not familiar with working with sequences and sequence alignments, or has never edited or published alignments with Jalview

12-1pm Lunch

Session 2. Alignment and alignment analysis.

  • creating sequence alignments

  • importing and calculating trees

  • tree based alignment analysis

  • viewing sequence annotation

  • secondary structure prediction

  • viewing structures.

Recommended for anyone wanting to use Jalview to access multiple alignment and alignment analysis software or for function analysis