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Jalview is the fifth patch release in the 2.11.2 series. It includes several minor revisions, including a revised Pfam alignment retrieval client based on the Interpro web API, and a fix for a bug where overlapping features of the same type assigned different colours were not shown as coloured differently in the overview window.

Issues Resolved

  • Pfam Full and Seed alignment retrieval switched to use http://www.ebi.ac.uk/interpro/api/
  • URLs reporting Content-Type as application/gzip not being recognized as a gzipped stream
  • Clustalx colour scheme renamed (back) to Clustal in the GUI
  • Spanish translations added for gecos colour schemes introduced in
  • Overview doesn’t colour nested features the same as in the alignment view