Jalview 2.10.2b1

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WARNING! Downloading this JVL file might automatically switch your Jalview installation to version 2.10.2b1 (without auto-updates).

To revert back to the Jalview RELEASE channel, please visit the Using the Jalview Launch file page.

Download the Jalview Launch file (.jvl) for version 2.10.2b1?


New Features

  • Show gaps in overview window by colouring in grey (sequences used to be coloured grey, and gaps were white)
  • Overview tab in Jalview Desktop Preferences
  • Overview updates immediately on increase in size and progress bar shown as higher resolution overview is recalculated

Issues Resolved

  • Overview window redraws every hidden column region row by row
  • duplicate protein sequences shown after retrieving Ensembl crossrefs for sequences from Uniprot
  • Overview window throws NPE if show boxes format setting is unticked
  • Groups are coloured wrongly in overview if group has show boxes format setting unticked
  • Redraw problems when autoscrolling whilst dragging current selection group to include sequences and columns not currently displayed
  • Not all chains are mapped when multimeric assemblies are imported via CIF file
  • Gap colour in custom colourscheme is not displayed when threshold or conservation colouring is also enabled.
  • JABAWS 2.2 services report wrong JABAWS server version
  • Jalview continues to scroll after dragging a selected region off the visible region of the alignment
  • Cannot apply annotation based colourscheme to all groups in a view
  • IDs don’t line up with sequences initially after font size change using the Font chooser or middle-mouse zoom