Peer reviewed publications

If you use Jalview 2 in your work, please cite Waterhouse et al. (2009):

  • Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191. doi:10.1093/bioinformatics/btp033

To cite an analysis performed with JABAWS, please use Troshin et al. (2011):

  • Troshin PV, Procter JB, Barton GJ (2011) Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA. Bioinformatics 27: 2001-2002. doi:10.1093/bioinformatics/btr304

Other Jalview related publications are:

  • Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, et al. (2006) MACSIMS: multiple alignment of complete sequences information management system. BMC Bioinformatics 7: 318. doi:10.1186/1471-2105-7-318
  • Clamp M, Cuff J, Searle SM, Barton GJ (2004) The Jalview Java alignment editor. Bioinformatics 20: 426-427.

Citations for the Jalview 2 paper: