Jalview's services will be unavailable from 17:00 GMT on Thurs 9 Dec until 9:00 on Monday 13 Dec 2021.

The downtime is due to major network engineering, and affects all of the Jalview and Barton group web servers.
If you urgently require Jalview analysis services during this period, we recommend you install the JABAWS virtual appliance and configure your Jalview desktop preferences so it can access it.

Peer reviewed publications

If you use Jalview 2 in your work, please cite Waterhouse et al. (2009):

  • Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191. doi:10.1093/bioinformatics/btp033

To cite an analysis performed with JABAWS, please use Troshin et al. (2011):

  • Troshin PV, Procter JB, Barton GJ (2011) Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA. Bioinformatics 27: 2001-2002. doi:10.1093/bioinformatics/btr304

Other Jalview related publications are:

  • Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, et al. (2006) MACSIMS: multiple alignment of complete sequences information management system. BMC Bioinformatics 7: 318. doi:10.1186/1471-2105-7-318
  • Clamp M, Cuff J, Searle SM, Barton GJ (2004) The Jalview Java alignment editor. Bioinformatics 20: 426-427.
    doi:10.1093/bioinformatics/btg430

Citations for the Jalview 2 paper: