JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive display for precalculated alignments, features and annotations files. It lacks some functionality available in the Jalview Desktop, however, such as making images, saving files, and running web service jobs. This is mostly due to security restrictions imposed on applets.

Try out JalviewLite by pressing one of the buttons below. For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

Ferredoxins, chloroplast precursor related UniRef50 cluster

(15 sequences x 150 residues)

User Defined Colours, loads an associated Newick format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
Displays a features file on the alignment
Associates PDB file 1GAQ with sequence FER1_MAIZE
Displays a Multiple Sequence Alignment Based JNet Prediction for a Sequence

RF00031 RFAM Alignment with per sequence secondary structure

Displays an RFAM RNA fold family with secondary structure annotation