MACSIMS is a multiple alignment-based information management system that combines the advantages of both knowledge-based and ab initio sequence analysis methods.
The MACSIMS project helped to develop the input and display of sequence features in Jalview in order to display large datasets with many sequence features.
Thompson, J. D., Muller, A., Waterhouse, A. Procter, J., Barton, G. J., Plewniak, F. and Poch, O. (2006)
"MACSIMS: Multiple Alignment of Complete Sequences Information Management System",
BMC Bioinformatics. [PubMed] [FullText] [PDF], 7, 318.