What is Jalview?
Jalview is a multiple alignment editor written in Java.
It is used widely in a variety of web pages (e.g. the EBI Clustalw
server and the Pfam protein domain database) but is available
as a general purpose alignment editor.
Jalview Development is supported from 2009
to 2014 by the BBSRC,
and coordinated by Geoff Barton at the University
of Dundee. Version 2 arose from the "VAMSAS"
Project (BBSRC eScience 2004-2007), with consultancy (blessing
:-) from Michele Clamp; the originator of Jalview.
Authors :
Version 2+ Andrew Waterhouse; Jim Procter; David Martin; Geoff
Barton
Version 1+ Michele Clamp; James Cuff; Stephen Searle; Geoff
Barton
Thanks to Andreas Prlic for code and suggestions for DAS feature
capabilities and Benjamin Schuster-Böckler for his Stockholm
parsing code, both from the Wellcome Trust Sanger Institute,
Cambridge.
If you use Jalview in your work, please quote this publication:
Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and
Barton, G. J. (2009)
"Jalview Version 2 - a multiple sequence alignment editor
and analysis workbench"
Bioinformatics 25 (9) 1189-1191 doi:
10.1093/bioinformatics/btp033
|
