Looking for the 'Launch Jalview' buttons ?

You need to download an installer to run Jalview 2.11.
You can still use webstart to access old versions of Jalview in the version archive

Peer reviewed publications

If you use Jalview 2 in your work, please cite Waterhouse et al. (2009):

  • Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191. doi:10.1093/bioinformatics/btp033

To cite an analysis performed with JABAWS, please use Troshin et al. (2011):

  • Troshin PV, Procter JB, Barton GJ (2011) Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA. Bioinformatics 27: 2001-2002. doi:10.1093/bioinformatics/btr304

Other Jalview related publications are:

  • Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, et al. (2006) MACSIMS: multiple alignment of complete sequences information management system. BMC Bioinformatics 7: 318. doi:10.1186/1471-2105-7-318
  • Clamp M, Cuff J, Searle SM, Barton GJ (2004) The Jalview Java alignment editor. Bioinformatics 20: 426-427.
    doi:10.1093/bioinformatics/btg430

Citations for the Jalview 2 paper: