Version 2.10.2
Lots of bug fixes, new tree/pca dialogs, score models, colour scheme implementation, overview capabilities, Jalview/Chimera annotation exchange
CBBU Workshop: Multiple Sequence Alignment with Jalview
The workshop will be delivered by a Jalview coordinator James Procter from University of Dundee.
Multiple Sequence Alignment and Analysis with Jalview
This workshop course employs talks and hands-on exercises to help researchers start using the versatile protein and nucleic acid alignment and visualisation software Jalview (developed within the School of Life Sciences). Over two sessions, we will cover launching Jalview, accessing sequence, alignment and 3D structure databases, creating, editing and analysing alignments, phylogenetic trees, visualisation of 3D structure data, and preparation of figures for presentation and publication.
At Dalhousie 1G01 from 9 to 5pm on Wednesday 22nd February 2017
St Andrews 2017 One Day Workshop
Jalview Multiple Sequence Alignment and Analysis Workshop for investigating structure and function of protein, RNA and DNA
Date: Friday 24th February 2017
Location: BUT:A21 Computer Classroom, Bute building, University of St Andrews KY16 9TS
Time: 9.00am - 5.00pm
Register: https://goo.gl/nPhKpZ
Version 2.10.1
Minor release in 2.10 series. More memory efficient, new features for selecting from linked structure views, minor patches to amino acid and consensus calculations and handling of structure files.
Can't see databases in Database Chooser after selecting Fetch Sequences...!
If you are running Jalview 2.10.0 under Ubuntu or some other (possibly GTK based) Linux desktop, you may find that after opening the Sequence Fetcher, you are presented with a dialog box just showing 'OK' and 'Cancel' buttons, but nothing much else. The empty panel is due to an underlying problem with Java, but you can still choose from the list of databases with the keyboard !
Version 2.10.0
Ensembl client for genes, transcripts and variants. SIFTS and mmCIF for accurate multi-chain structure mapping, and lots more.
Jalview Glasgow 2016 One Day Workshop
Protein, RNA and DNA multiple sequence alignment and functional analysis workshop using Jalview
This one day computer based hands-on training course is designed for life sciences graduate students and researcher scientists who works with proteins, RNA and DNA sequence data. The course will involve presentations, hands-on exercises and demonstrations. Plus, there are opportunities during the day to discuss your own analysis problems with the Jalview developers. Participants are given a Jalview training manual.
Of these 3 features available in Jalview, which do you like most:
Being able to launch Jalview in a single step from a web browser
51% (487 votes)
Being able to retrieve data from public databases eg Uniprot
15% (144 votes)
Linked views of aligned sequences, structures and trees
34% (331 votes)
Total votes: 962
2016 SLS Postgrad Computational Training
Multiple Sequence Alignment and Analysis with Jalview
This workshop course employs talks and hands-on exercises to help students start using the versatile protein and nucleic acid alignment and visualisation software Jalview (developed within the School of Life Sciences). Over two sessions, we will cover launching Jalview, accessing sequence, alignment and 3D structure databases, creating, editing and analysing alignments, phylogenetic trees, visualisation of 3D structure data, and preparation of figures for presentation and publication.
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