Exporting Alignments for viewing with the BioJS MSA Viewer
To find out more about the BioJS MSA Viewer, please go to http://msa.biojs.net/.
Making sure your BioJS MSA export uses the latest BioJS MSA Viewer
In order to allow Jalview to export data with the latest version of the MSA viewer, the Jalview Desktop will download templates for HTML export from our public GitHub Repository. Normally, this should happen without you needing to do anything, but if you do encounter problems, then please get in contact via the jalview-discuss mailing list, or file a bug report.
Templates are downloaded to a directory called '.biojs_templates' in your user's home storage space (e.g. ~/.biojs_templates).