Jalview's services will be unavailable from 17:00 GMT on Thurs 9 Dec until 9:00 on Monday 13 Dec 2021.

The downtime is due to major network engineering, and affects all of the Jalview and Barton group web servers.
If you urgently require Jalview analysis services during this period, we recommend you install the JABAWS virtual appliance and configure your Jalview desktop preferences so it can access it.


New Jalview Patch Release:

The latest patch release for Jalview 2.11.1 is now available via over the air update and the Jalview download page.

This release provides patches for critical bugs affecting the Find function, and also affecting alignment and analysis of linked sets of CDS and Protein sequences. New installers are also provided to address problems when installing Jaliew on Windows to locations containing spaces in the path (only affects new installations).

New patch release: Jalview 2.10.4b1

The first patch release for Jalview 2.10.4 is now available. It includes the following minor improvments and critical patches:

  • HGVS nomenclature used for variant annotation retrieved from Uniprot
  • Uniprot import fails for some sequences (Cannot import features with multiple variant elements)
  • Clustal files with sequence positions in right-hand column are now parsed correctly
  • Wrap view - export to SVG - IDs shown but not alignment area in exported graphic
  • F2/Keyboard mode edits work when Overview window has input focus
  • Windows specific fixes:
    • Annotation panel set too high when annotation added to view
    • Updated search paths for Chimera default installation
    • Windows File Shortcuts can be dragged onto the Jalview Desktop
    • Drag URL from Chrome, Firefox, IE to Jalview desktop on Windows doesn't open file:
      Dragging the currently open URL and links from a page viewed in Firefox or Chrome on Windows is now fully supported.
      If you are using Edge, only links in the page can be dragged.
      With Internet Explorer, only the currently open URL in the browser can be dropped onto Jalview.

If you experience any problems, please let us now via Twitter (@Jalview) or the jalview mailing lists.

Jalview 2.10.2b1 Released

A bugfix release for 2.10.2 is now available. Version 2.10.2b1 has the following new features:

  • Show gaps in overview window by colouring in grey (sequences used to be coloured grey, and gaps were white)
  • Overview tab in Jalview Desktop Preferences
  • Overview updates immediately on increase in size and progress bar shown as higher resolution overview is recalculated

Several minor (and not so minor) bugs are also resolved, including problems with retrieval of Ensembl crossreferences for Uniprot sequences, and PDB sequence/structure associations.


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