[Jalview-discuss] export figure from Jmol

[John Berrisford]

Dear Paul

Thanks for the suggestion. Chimera is new to me and, after a quick play, 
does indeed do everything I need.
Thanks again

John

Paul Pillot wrote:
> Have you tried the Chimera software ? It performs sequence alignments, maps it to the 3D structure and allows you probably as many further analysis as you might dream off ?
> - Paul
>
> Le 11 mars 2010 à 15:19, John Berrisford a écrit :
>
>   
>> Thanks for the suggestion, a useful feature, but this doesn't do exactly 
>> what I want. 
>> I try a different way.  I have performed a sequence alignment in Jalview 
>> and then mapped the sequence onto a structure - this is a great feature 
>> in Jalview and the reason I use the program.
>> However, the subsequent analysis which I want to do on the structure is 
>> a bit too complicated for the jmol structure viewer, so I would like to 
>> output a list of conserved residues out of Jalview (at various 
>> thresholds). A simple text file would do, so I can use another program 
>> such as pymol to continue my analysis. Is this possible?
>>
>> Thanks again
>>
>> John
>>
>> -- 
>> John Berrisford
>>
>> Medical Research Council
>> Mitochondrial Biology Unit
>> Wellcome Trust / MRC Building
>> Hills Road
>> Cambridge
>> CB2 0XY
>> WEB: www.mrc-mbu.cam.ac.uk
>> TEL: +44 (01223) 252918
>>
>> _______________________________________________
>> Jalview-discuss mailing list
>> Jalview-discuss at jalview.org
>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
>>     
>
>
>   


-- 
John Berrisford

Medical Research Council
Mitochondrial Biology Unit
Wellcome Trust / MRC Building
Hills Road
Cambridge
CB2 0XY
WEB: www.mrc-mbu.cam.ac.uk
TEL: +44 (01223) 252918

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