[Jalview-discuss] export figure from Jmol

[Paul Pillot]

Have you tried the Chimera software ? It performs sequence alignments, maps it to the 3D structure and allows you probably as many further analysis as you might dream off ?
- Paul

Le 11 mars 2010 à 15:19, John Berrisford a écrit :

> Thanks for the suggestion, a useful feature, but this doesn't do exactly 
> what I want. 
> I try a different way.  I have performed a sequence alignment in Jalview 
> and then mapped the sequence onto a structure - this is a great feature 
> in Jalview and the reason I use the program.
> However, the subsequent analysis which I want to do on the structure is 
> a bit too complicated for the jmol structure viewer, so I would like to 
> output a list of conserved residues out of Jalview (at various 
> thresholds). A simple text file would do, so I can use another program 
> such as pymol to continue my analysis. Is this possible?
> 
> Thanks again
> 
> John
> 
> -- 
> John Berrisford
> 
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