[Jalview-discuss] export figure from Jmol

John Berrisford jmb at mrc-mbu.cam.ac.uk
Thu Mar 11 14:19:49 GMT 2010


Thanks for the suggestion, a useful feature, but this doesn't do exactly 
what I want. 
I try a different way.  I have performed a sequence alignment in Jalview 
and then mapped the sequence onto a structure - this is a great feature 
in Jalview and the reason I use the program.
However, the subsequent analysis which I want to do on the structure is 
a bit too complicated for the jmol structure viewer, so I would like to 
output a list of conserved residues out of Jalview (at various 
thresholds). A simple text file would do, so I can use another program 
such as pymol to continue my analysis. Is this possible?

Thanks again

John

-- 
John Berrisford

Medical Research Council
Mitochondrial Biology Unit
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