[Jalview-discuss] export figure from Jmol

[John M. Berrisford]

Dear all

I have been using Jalview to perform a sequence alignment on a protein 
for which I have a structure. This produces a figure in Jmol which 
colours the structure by conservation. This is a great feature, but Jmol 
isn't great for producing publication quality figures. I was wondering 
if its possible to output the pdb file from Jmol with the conserved 
residues labelled in some way, for example in the B factor column of the 
pdb file.

Thanks

John

-- 
John Berrisford

Medical Research Council
Mitochondrial Biology Unit
Wellcome Trust / MRC Building
Hills Road
Cambridge
CB2 0XY
WEB: www.mrc-mbu.cam.ac.uk
TEL: +44 (01223) 252918