[Jalview-discuss] I signed up for this maillist Jalview and I was rejected in my post

[James Procter]

Hi Barry.

Regarding your rejected post - have you confirmed your subscription to 
jalview-discuss ?  You need to activate your subscription before you can 
post to the list (you should have received an email with a URL that will 
take you to the confirmation page).

On Sun, 11 Oct 2009 06:42:02 -0400
barry kesner <kesner at med.unc.edu> wrote:

> I am trying to associate sequences with my own pdb files.  I make the  
> association, 
OK. Once associated, you should be able to view the structure via the 
View Structure submenu of the sequence popup menu.

> but the sequence does not remain associated.  
In Jalview 2.4, the association only stays with the sequence in that 
alignment, and any other alignments that you might copy and paste that 
seuqence in to. This means, if you load another alignment containing the 
same sequence, you'll have to reassociate the PDB file. Also, the 
associations can only be saved Jalview project file (and the modeller 
PIR). So if you reload the same alignment from a flat file (such as 
FASTA), you'll similarly have to remake the association.

Is any of the above what you are experiencing ?

 >I am
> running snow leopard on OSX.

Thanks for letting me know. If you get the chance, please test the 
development version of Jalview (see 
http://www.jalview.org/versions.html) on snow leapard!

Jim.

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J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
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