[Jalview-discuss] Protein structure features

[James Procter]

Hi Will.

Glad to hear that Jalview has been useful here - annotation is one of
its primary uses, so its great to get some feedback.

William Ross Pitt wrote:
>> has proven a very useful tool for doing this kind of thing. It did take
>> a little while to get my first feature file accepted by the program
>> because of the lack of error messages.
I understand your point here - error messages are output to the console,
but of course - they should be reported in a dialog box, and should be a
little more informative.

 Also, I need to replace
>> disordered residues with X's so that  the residue numbers match the
>> sequence numbers. 
Ok. Perhaps we should talk more off list about this.  It sounds like you
need to work with UNIPROT sequences directly rather than import the
sequences directly from the PDB file (in which case, only residues with
an alpha carbon will be used to construct the sequence).

That said, my co-workers seem to to find the results
>> useful. 
Great!

Thanks
Jim.

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J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
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