[Jalview-discuss] Newbie: Exception: java.lang.ClassNotFoundException: jalview.bin.JalviewLite

[Thomas Juettemann]

Hi James,

one of these painful errors. I thought that it had something to do
with the size, but I was playing with the param  windowWidth &
windowHeight.

One lives and learns... ;)

Thanks again for all your support!

Cheers,
Thomas



On Wed, Aug 12, 2009 at 09:54, James Procter<jimp at compbio.dundee.ac.uk> wrote:
> Hi Thomas.
>
> Thomas Juettemann wrote:
>>
>> thanks again for your advice. Your hint together with Sean Moore's
>> that a semicolon (= programming character) in the comment line is not
>> a good idea took care of that problem.
>
> great!
>
>> The alignment file is later
>> used for MODELLER, it was easier to already include the P1; at that
>> stage.
>
> I thought that might be the case. You could always pass the modeller PIR
> directly to Jalview - it will read it.
>
>> I hope you will be able to help me with one last question: I tried to
>> embed Jalview in the webpage, using
>>
>> <param name="embedded" value="true">
>>
>> I get the message that it successfully loaded the file, but can't see
>> the alignment.
>
> Set the applet width and height attrubutes to something sensible (500 and
> 400 perhaps) and you should have a bit more luck!
>
> Here's an example:
> http://www.compbio.dundee.ac.uk/user/ws-dev1/jalview/release/applet/embedded.html
>
> Have fun!
> Jim.
>
> --
> -------------------------------------------------------------------
> J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
> Phone/Fax:+44(0)1382 388734/345764  http://www.compbio.dundee.ac.uk
> The University of Dundee is a Scottish Registered Charity, No. SC015096.
>