[Jalview-discuss] Newbie: Exception: java.lang.ClassNotFoundException: jalview.bin.JalviewLite

[James Procter]

Hi Thomas.

Thomas Juettemann wrote:
> thanks again for your advice. Your hint together with Sean Moore's
> that a semicolon (= programming character) in the comment line is not
> a good idea took care of that problem. 
great!

> The alignment file is later
> used for MODELLER, it was easier to already include the P1; at that
> stage.
I thought that might be the case. You could always pass the modeller PIR 
directly to Jalview - it will read it.

> I hope you will be able to help me with one last question: I tried to
> embed Jalview in the webpage, using
> 
> <param name="embedded" value="true">
> 
> I get the message that it successfully loaded the file, but can't see
> the alignment.
Set the applet width and height attrubutes to something sensible (500 
and 400 perhaps) and you should have a bit more luck!

Here's an example:
http://www.compbio.dundee.ac.uk/user/ws-dev1/jalview/release/applet/embedded.html

Have fun!
Jim.

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J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
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