[Jalview-discuss] Newbie: Exception: java.lang.ClassNotFoundException: jalview.bin.JalviewLite

[Thomas Juettemann]

Hi James,

many thanks for your reply. I have the applet working now, but it is
not displaying the alignment, it concatenates all sequences.
Are there special requirements for the FASTA format?
Testpage:

http://bisc.cse.ucsc.edu/testjview.html

The input file can found here:

 http://bisc.cse.ucsc.edu/models/BiscHet/P15303-P20606/P15303-1M2O_A.muscle.out.fasta

Many thanks,
Thomas

On Tue, Aug 4, 2009 at 02:36, James Procter<jimp at compbio.dundee.ac.uk> wrote:
> Hello Thomas.
>
> Sorry to hear your having problems with getting the applet going:
> Thomas Juettemann wrote:
>>
>> Caused by: java.io.IOException: open HTTP connection
>> failed:http://bisc.cse.ucsc.edu/jalview/bin/JalviewLite.class
>
> This is generated by the applet launcher trying to retrieve the java classes
> directory, after failing to retrieve the archive at the given path.
>
> Your applet tag looks fine. I think there may be a problem with the
> configuration of your web server, meaning the cgi-bin directory is not
> actually served externally. Remember, the archive parameter has to resolve
> to a URL that the browser can use to retrieve the jalviewApplet.jar archive,
> and http://bisc.cse.ucsc.edu/cgi-bin/jalviewApplet.jar does not work.
>
> There is actually no reason to put jalviewApplet.jar in the cgi-bin
> directory, since it is a client side resource. Try changing the archive
> parameter to "jalviewApplet.jar", and copy the jalviewApplet.jar file to the
> same directory on the web server as your testjview.html page.
>
> hope this helps!
> Jim
>
> --
> -------------------------------------------------------------------
> J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
> Phone/Fax:+44(0)1382 388734/345764  http://www.compbio.dundee.ac.uk
> The University of Dundee is a Scottish Registered Charity, No. SC015096.
>