[Jalview-discuss] links in multiple sequence alignment

Thu Sep 4 11:08:51 BST 2008

Hi Jim,

The applet version on the jalview site works great. Might it have  
something to do with the links being relative instead of absolute?

Bas

On 4 Sep, at 11:59, James Procter wrote:

> Hello Bas.
>
> Bas Vroling wrote:
>> I've got a multiple sequence alignment with an annotation file. For  
>> some
>> residues, I want to link to a another page on my site.
>> However, when I put something like this in the annotations file:
>>
>> <html><a href="/mutations/acm1_rat/K136">K136</a></html> ACM1_RAT
>> -1      136     136     mutation
>>
>>
>> I can right-click on those residues in the msa and the link menu
>> appears, but when I click on it nothing happens...
> Can you check in your browser that the applet examples page works ?
>
> http://www.jalview.org/examples/applets.html
>
> Open the 'Displays a features file on the alignment' jalview appet,  
> and
> try to open a link from the PFAM annotation.
>
> A problem that we have noticed recently is that popup-blockers
> (specifically, on windows vista) do not inform you when they block the
> 'showURL' call that an applet makes when it tries to open a URL in the
> browser. So check the popup-blocker settings for your site.
>
> Jim
>
> -- 
> -------------------------------------------------------------------
> J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
> Phone/Fax:+44(0)1382 388734/345764  http://www.compbio.dundee.ac.uk
> The University of Dundee is a Scottish Registered Charity, No.  
> SC015096.
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