[Jalview-discuss] Loading annotations

[James Wasmuth]

Thanks Judith.

there was a space in the first line instead of a space <embarrassed smile>.
Fixed that and it works!

-james


On Fri, Apr 25, 2008 at 3:32 PM, Judith Cohn <jcohn at lanl.gov> wrote:

> Hi,
> I am using Jalview 2.3  (though the about option says 6.1).  I do the same
> thing.  I load a .aln file (from clustalw) then from the alignment window in
> Jalview I choose Load Features/Annotations and it works.  An example of the
> beginning of a features file (which I create automatically in a Java
> program):
>
> dpa1 111111
> d1gv1a1_O d1gv1a1 -1 6 6 dpa1
>
> The main difference I see in my file versus yours (at least as included in
> the email) is that I used tabs and your snippet appears to have spaces
> between columns.
> Note:  I use the numeric designation of a color so that I can get
> gradations of the same color.
>
> Judith
>
>
> On Apr 25, 2008, at 12:09 PM, James Wasmuth wrote:
>
> Hi All,
>
> I wish to use an annotation file to decorate my alignment. I created a
> dummy file (below) and used File->Load Features/Annotations. The file is
> called features.txt.
>
> I am greated with an error box saying that jalview,
> "Couldn't load file /tmp/features.txt
> Formats currently supported are
> Fasta, MSF, Clustal, BLC, PIR, MSP and Pfam"
>
> Can someone enlighten me as to how I can load in my file? The alignment is
> displayed when I try this.
>
> many thanks
> -james
>
> >less features.txt
> tash red
>
> tash_domain    Tp_2992.1    -1    263    281    tash
>
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>
>
> --------------------
>
> Judith Cohn, Ph.D.
> Information Science (CCS-3)
> Mail Stop B256
> Los Alamos National Lab
> Los Alamos, NM 87545
> phone:  505-665-0999
> email:  jcohn at lanl.gov
>
>
>
>
>
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