[Jalview-discuss] Loading annotations

[Judith Cohn]

Hi,

I am using Jalview 2.3  (though the about option says 6.1).  I do the  
same thing.  I load a .aln file (from clustalw) then from the  
alignment window in Jalview I choose Load Features/Annotations and it  
works.  An example of the beginning of a features file (which I  
create automatically in a Java program):

dpa1	111111
d1gv1a1_O	d1gv1a1	-1	6	6	dpa1

The main difference I see in my file versus yours (at least as  
included in the email) is that I used tabs and your snippet appears  
to have spaces between columns.
Note:  I use the numeric designation of a color so that I can get  
gradations of the same color.

Judith


On Apr 25, 2008, at 12:09 PM, James Wasmuth wrote:
> Hi All,
>
> I wish to use an annotation file to decorate my alignment. I  
> created a dummy file (below) and used File->Load Features/ 
> Annotations. The file is called features.txt.
>
> I am greated with an error box saying that jalview,
> "Couldn't load file /tmp/features.txt
> Formats currently supported are
> Fasta, MSF, Clustal, BLC, PIR, MSP and Pfam"
>
> Can someone enlighten me as to how I can load in my file? The  
> alignment is displayed when I try this.
>
> many thanks
> -james
>
> >less features.txt
> tash red
>
> tash_domain    Tp_2992.1    -1    263    281    tash
>
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--------------------

Judith Cohn, Ph.D.
Information Science (CCS-3)
Mail Stop B256
Los Alamos National Lab
Los Alamos, NM 87545
phone:  505-665-0999
email:  jcohn at lanl.gov




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