Jalview is free to end-users because of support from the UK's BBSRC and The Wellcome Trust

If you would like to see Jalview continue to be available then please take a few minutes to write us a support letter saying how you use Jalview in your research/teaching.

Write as a PDF including your institution's heading and send to:
support_jalview@bartongroup.org by Friday 19th October 2018.

Thank you all those who have already written such nice letters!

Peer reviewed publications

If you use Jalview 2 in your work, please cite Waterhouse et al. (2009):

  • Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191. doi:10.1093/bioinformatics/btp033

To cite an analysis performed with JABAWS, please use Troshin et al. (2011):

  • Troshin PV, Procter JB, Barton GJ (2011) Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA. Bioinformatics 27: 2001-2002. doi:10.1093/bioinformatics/btr304

Other Jalview related publications are:

  • Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, et al. (2006) MACSIMS: multiple alignment of complete sequences information management system. BMC Bioinformatics 7: 318. doi:10.1186/1471-2105-7-318
  • Clamp M, Cuff J, Searle SM, Barton GJ (2004) The Jalview Java alignment editor. Bioinformatics 20: 426-427.
    doi:10.1093/bioinformatics/btg430

Citations for the Jalview 2 paper: