Version 2.3

Jalview is free to end-users because of support from the UK's BBSRC and The Wellcome Trust

If you would like to see Jalview continue to be available then please take a few minutes to write us a support letter saying how you use Jalview in your research/teaching.

Write as a PDF including your institution's heading and send to: by Friday 19th October 2018.

Thank you all those who have already written such nice letters!

Version Date: 

New Features

  • Jmol 11.0.2 integration
  • PDB views stored in Jalview XML files
  • Slide sequences
  • Edit sequence in place
  • EMBL CDS features
  • DAS Feature mapping
  • Feature ordering
  • Alignment Properties
  • Annotation Scores
  • Sort by scores
  • Feature/annotation editing in applet

Issues Resolved

  • Headless state operation in 2.2.1
  • Incorrect and unstable DNA pairwise alignment
  • Cut and paste of sequences with annotation
  • Feature group display state in XML
  • Feature ordering in XML
  • blc file iteration selection using filename # suffix
  • Stockholm alignment properties
  • Stockhom alignment secondary structure annotation
  • 2.2.1 applet had no feature transparency
  • Number pad keys can be used in cursor mode
  • Structure Viewer mirror image resolved