Version 2.3

Thank you to everyone who wrote letters of support last year for our application to the BBSRC, we should hear the outcome in the next couple of months.

We are now applying to the Wellcome Trust to renew funding to support Jalview's use in biomedical sequence analysis, including interpretation of genomic variation and long read RNA data (e.g. Nanopore) at the protein coding level. If you would like Jalview to continue to develop and be supported then please take a few minutes to write us a support letter saying how you use Jalview in your research/teaching.

Write as a PDF including your institution's heading and send to: by Friday 22nd March 2019.

Thank you!

Version Date: 

New Features

  • Jmol 11.0.2 integration
  • PDB views stored in Jalview XML files
  • Slide sequences
  • Edit sequence in place
  • EMBL CDS features
  • DAS Feature mapping
  • Feature ordering
  • Alignment Properties
  • Annotation Scores
  • Sort by scores
  • Feature/annotation editing in applet

Issues Resolved

  • Headless state operation in 2.2.1
  • Incorrect and unstable DNA pairwise alignment
  • Cut and paste of sequences with annotation
  • Feature group display state in XML
  • Feature ordering in XML
  • blc file iteration selection using filename # suffix
  • Stockholm alignment properties
  • Stockhom alignment secondary structure annotation
  • 2.2.1 applet had no feature transparency
  • Number pad keys can be used in cursor mode
  • Structure Viewer mirror image resolved