Version 2.4.0.b2

Thank you to everyone who wrote letters of support last year for our application to the BBSRC, we should hear the outcome in the next couple of months.

We are now applying to the Wellcome Trust to renew funding to support Jalview's use in biomedical sequence analysis, including interpretation of genomic variation and long read RNA data (e.g. Nanopore) at the protein coding level. If you would like Jalview to continue to develop and be supported then please take a few minutes to write us a support letter saying how you use Jalview in your research/teaching.

Write as a PDF including your institution's heading and send to: by Friday 22nd March 2019.

Thank you!

Version Date: 

New Features

  • Experimental support for google analytics usage tracking.
  • Jalview privacy settings (user preferences and docs).

Issues Resolved

  • Race condition in applet preventing startup in jre1.6.0u12+.
  • Exception when feature created from selection beyond length of sequence.
  • Allow synthetic PDB files to be imported gracefully
  • Sequence associated annotation rows associate with all sequences with a given id
  • Find function matches case-insensitively for sequence ID string searches
  • Non-standard characters do not cause pairwise alignment to fail with exception

Application Issues

  • Sequences are now validated against EMBL database
  • Sequence fetcher fetches multiple records for all data sources

InstallAnywhere Issues

  • Dock icon works for Mac OS X java (Mac 1.6 update issue with installAnywhere mechanism)
  • Command line launching of JARs from InstallAnywhere version (java class versioning error fixed)