Patch release for 2.10.3, fixes critical bugs and is the first release of 2018.
Jalview is compatible with Java 9, but only via webstart, or with a modified command-line launch script. If you use the InstallAnywhere version of Jalview it will recommend you install Java 8.
If you have installed Jalview via InstallAnywhere and you cannot access JABAWS services (a dialog box appears after you start Jalview about this), then you can patch the Jalview installation.
On OSX: - Add two lines to the Jalview.app/Contents/Info.plist file after the line starting <string>-Xdock:icon=
More efficienct data structures for handing sequence features and improved rendering performance when working with large alignments.
(1) Multiple Sequence Alignment and Analysis with Jalview on Thursday 23rd November 2017
Day 1 workshop employs talks and hands-on exercises to help students learn to use Jalview, a versatile protein and nucleic acid sequence alignment and analysis tool developed within the School of Life Sciences. We will cover launching Jalview, accessing sequence, alignment and 3D structure databases, creating, editing and analysing alignments, phylogenetic trees, analysing alignments with 3D structures, and preparation of figures for presentation and publication.
Patch release updating client for fetching sequences from uniprot.org and HTTPS access to services at ebi.ac.uk.
Bugfix release for 2.10.2 and new preferences tab for overview window
This August 2017 release of Jalview introduces new user interface features, improved and more extensible tree and PCA analysis, more robust 3D structure viewing with UCSF Chimera and an updated service client for JABAWS. The full list of bug fixes and new features can be found in the 2.10.2 Release Notes, but the highlights are below.
Lots of bug fixes, new tree/pca dialogs, score models, colour scheme implementation, overview capabilities, Jalview/Chimera annotation exchange