What is Jalview?
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of
web pages (e.g. the EBI Clustalw server and the Pfam protein
domain database) but is available as a general purpose
alignment editor.
Jalview development has been funded for
three years from 1st October 2004 by the BBSRC as part
of the "VAMSAS"
Project. This project is coordinated by Geoff Barton at the
University of Dundee with partners at EBI and BioSS and
consultancy (blessing :-) from Michele Clamp; the originator
of Jalview.
Authors :
Version 2+ Andrew Waterhouse; Jim Procter; David Martin;
Geoff Barton
Version 1+ Michele Clamp; James Cuff; Stephen Searle; Geoff
Barton
Thanks to Andreas Prlic for code and suggestions for DAS
feature capabilities and Benjamin Schuster-Böckler for his
Stockholm parsing code, both from the Wellcome Trust Sanger
Institute, Cambridge.
If you use Jalview in your work, please quote this
publication.
Clamp, M., Cuff,
J., Searle, S. M. and Barton, G. J. (2004),
"The Jalview Java Alignment Editor," Bioinformatics, 20,
426-7
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