NEWS: 19th January 2009 - Jalview 2 Applicaton Note published in Bioinformatics

What is Jalview?
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) but is available as a general purpose alignment editor.

Jalview 2 development was funded from 2004 to 2007 by the BBSRC as part of the "VAMSAS" Project. This project is coordinated by Geoff Barton at the University of Dundee with partners at EBI and BioSS and consultancy (blessing :-) from Michele Clamp; the originator of Jalview.

Authors :
Version 2+  Andrew Waterhouse; Jim Procter; David Martin; Geoff Barton
Version 1+ Michele Clamp; James Cuff; Stephen Searle; Geoff Barton

Thanks to Andreas Prlic for code and suggestions for DAS feature capabilities and Benjamin Schuster-Böckler for his Stockholm parsing code, both from the Wellcome Trust Sanger Institute, Cambridge.

If you use Jalview in your work, please quote this publication:

    Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
    "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
    Bioinformatics doi: 10.1093/bioinformatics/btp033


Please send all bug reports and help requests to the jalview-discuss mailing list

NEWS: 1st September 2008 - Jalview Version 2.4 has been released.