What is Jalview?
Jalview is a multiple alignment editor written in Java.
It is used widely in a variety of web pages (e.g. the EBI Clustalw
server and the Pfam protein domain database) but is available
as a general purpose alignment editor.
Jalview 2 development was funded from
2004 to 2007 by the BBSRC
as part of the "VAMSAS" Project. This project
is coordinated by Geoff Barton at the University
of Dundee with partners at EBI
and BioSS
and consultancy (blessing :-) from Michele Clamp; the originator
of Jalview.
Authors :
Version 2+ Andrew Waterhouse; Jim Procter; David Martin;
Geoff Barton
Version 1+ Michele Clamp; James Cuff; Stephen Searle; Geoff
Barton
Thanks to Andreas Prlic for code and suggestions for DAS feature
capabilities and Benjamin Schuster-Böckler for his Stockholm
parsing code, both from the Wellcome Trust Sanger Institute,
Cambridge.
If you use Jalview in your work, please quote this publication:
Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
"Jalview Version 2 - a multiple sequence alignment editor and analysis
workbench"
Bioinformatics doi: 10.1093/bioinformatics/btp033
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