Jalview Desktop Downloads
Please download an installer or archive for your platform from the links below. Once installed, the Jalview application will keep itself up to date.
Jalview executable .jar file
This requires existing Java installation and can be launched via
java -jar jalview-all-220.127.116.11-j1.8.jar
To see what's new, view the Jalview 18.104.22.168 Release Notes.
If you need the source, then please download the Jalview 22.214.171.124 Source Tarball.
Running a specific version of Jalview
If you need to install a specific version and have an existing Java installation then we recommend downloading the Jalview Executable Jar (see table above). The Version Archive provides links to builds for earlier versions. Alternatively, up to date versions of Jalview designed for command line use are also available via conda and homebrew.
Install via Conda
A Jalview conda package is also available (tested on OSX and Linux) thanks to the great folk over at BioConda
To install via conda, first download Miniconda for your platform.
Then: open a terminal and type:
conda config --add channels defaults conda config --add channels bioconda conda config --add channels conda-forge conda install jalview