Jalview Desktop Downloads

Please download an installer or archive for your platform from the links below. Once installed, the Jalview application will keep itself up to date.

If you have OSX Catalina or Big Sur click below Download link for OSX Catalina or Big Sur	Mac OSX Disk Image OSX Catalina or Big Sur Users - for now, please download the old Jalview installer: Link for Catalina or Big Sur Users
	Windows x64 Installer
	Linux shell installer (x64)
	Linux shell installer (any)
	Unix .tar.gz file archive (any)
	Jalview executable .jar file This requires existing Java installation and can be launched via java -jar jalview-all-2.11.1.3-j1.8.jar

View all platforms

Other ways to install Jalview

To see what's new, view the Jalview 2.11.1.3 Release Notes.

If you need the source, then please download the Jalview 2.11.1.3 Source Tarball.

Running a specific version of Jalview

If you need to install a specific version and have an existing Java installation then we recommend downloading the Jalview Executable Jar (see table above). The Version Archive provides links to builds for earlier versions. Alternatively, up to date versions of Jalview designed for command line use are also available via conda and homebrew.

Install via Conda

A Jalview conda package is also available (tested on OSX and Linux) thanks to the great folk over at BioConda

To install via conda, first download Miniconda for your platform.
Then: open a terminal and type:

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda install jalview

Thanks to ej-technologies for granting a free install4j license to the Jalview Open Source Project. Jalview's installers were built with the install4j multi-platform installer builder and gradle.