Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar

JalviewLite Button Examples

Try out JalviewLite by pressing one of the buttons below.
For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.


Ferredoxins, chloroplast precursor related UniRef50 cluster

(15 sequences x 150 residues)

User Defined Colours, loads an associated Newick format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
Displays a features file on the alignment
Associates PDB file 1GAQ with sequence FER1_MAIZE
Displays a Multiple Sequence Alignment Based JNet Prediction for a Sequence

RF00031 RFAM Alignment with per sequence secondary structure

Displays an RFAM RNA fold family with secondary structure annotation

Linked Protein and cDNA alignments for a family of Steroid Receptors

Displays a split window view showing aligned protein and a reconstructed cDNA alignment.
Proteins were aligned with Muscle (version 3.8.31, via the Jalview Desktop).
Data retrieved from Uniprot and ENA, after Thornton, Need and Crews, Science 19 September 2003: 301 (5640), 1714-1717