Version 2.1

Jalview is free to end-users because of support from the UK's BBSRC and The Wellcome Trust

If you would like to see Jalview continue to be available then please take a few minutes to write us a support letter saying how you use Jalview in your research/teaching.

Write as a PDF including your institution's heading and send to: by Friday 19th October 2018.

Thank you all those who have already written such nice letters!

Version Date: 

New Features

  • MAFFT Multiple Alignment in default Web Service list
  • DAS Feature fetching
  • Hide sequences and columns
  • Export Annotations and Features
  • GFF file reading / writing
  • Associate structures with sequences from local PDB files
  • Add sequences to exisiting alignment
  • Recently opened files / URL lists
  • Applet can launch the full application
  • Applet has transparency for features (Java 1.2 required)
  • Applet has user defined colours parameter
  • Applet can load sequences from parameter "sequencex"

Issues Resolved

  • Redundancy Panel reinstalled in the Applet
  • Monospaced font - EPS / rescaling bug fixed
  • Annotation files with sequence references bug fixed