Version Date:
29-10-2020
Jalview 2.11.1.3 provides patches for critical bugs affecting the Find function, and analysis of linked CDS and Protein alignments.
Issues Resolved
- Find doesn't always highlight all matching positions in a sequence (bug introduced in 2.11.1.2)
- Alignments containing one or more protein sequences can be classed as nucleotide
- CDS alignment doesn't match original CDS sequences after alignment of protein products (known defect first reported for 2.11.1.0)
- No tooltip or popup menu for genomic features outwith CDS shown overlaid on protein
- Overlapping CDS in ENA accessions are not correctly mapped by Jalview (e.g. affects viral CDS with ribosomal slippage, since 2.9.0)
- Spliced transcript CDS sequences don't show CDS features
- Selections in CDS sequence panel don't always select corresponding protein sequences
- Make groups from selection for a column selection doesn't always ignore hidden columns
Installer
- Space character in Jalview install path on Windows prevents install4j launching getdown
Development
- Fixed typos and specified compatible gradle version numbers in doc/building.md