Jalview 2.10.2b1

Version Date: 
07-09-2017

New Features

  • Show gaps in overview window by colouring in grey (sequences used to be coloured grey, and gaps were white)
  • Overview tab in Jalview Desktop Preferences
  • Overview updates immediately on increase in size and progress bar shown as higher resolution overview is recalculated

Issues Resolved

  • Overview window redraws every hidden column region row by row
  • Duplicate protein sequences shown after retrieving Ensembl crossrefs for sequences from Uniprot
  • Overview window throws NPE if show boxes format setting is unticked
  • Groups are coloured wrongly in overview if group has show boxes format setting unticked
  • Redraw problems when autoscrolling whilst dragging current selection group to include sequences and columns not currently displayed
  • Not all chains are mapped when multimeric assemblies are imported via CIF file
  • Gap colour in custom colourscheme is not displayed when threshold or conservation colouring is also enabled.
  • JABAWS 2.2 services report wrong JABAWS server version
  • Jalview continues to scroll after dragging a selected region off the visible region of the alignment
  • Cannot apply annotation based colourscheme to all groups in a view
  • IDs don't line up with sequences initially after font size change using the Font chooser or middle-mouse zoom