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You need to download an installer to run Jalview 2.11.
You can still use webstart to access old versions of Jalview in the version archive

Archive of Previous Jalview Releases

The table below lists archived source and builds for previous jalview releases. Some of these may not run on your system, and we don't support them any more. If you've got data that only works with an old version of JalviewLite or the Jalview Desktop, or are trying to do something that doesn't work on the new version, then it could be that you've found a bug!.

Jalview 2.11.0 Webstart No Longer Supported Downloads for Jalview 2.11.0 Jalview 2.11.0 has no applet release Source Tarball for Jalview 2.11.0
Jalview 2.10.5 Webstart Jalview 2.10.5 InstallAnywhere Jalview 2.10.5 Jalview 2.10.5 Applet (Unsupported) Source Tarball for Jalview 2.10.5
Jalview 2.10.4b1 Webstart Jalview 2.10.4b1 InstallAnywhere Jalview 2.10.4b1 Jalview 2.10.4b1 Applet (Unsupported) Source Tarball for Jalview 2.10.4b1
Jalview 2.10.4 Webstart Jalview 2.10.4 InstallAnywhere Jalview 2.10.4 Jalview 2.10.4 Applet (Unsupported) Source Tarball for Jalview 2.10.4
Jalview 2.10.3b1 Webstart Jalview 2.10.3b1 InstallAnywhere Jalview 2.10.3b1 Jalview 2.10.3b1 Applet (Unsupported) Source Tarball for Jalview 2.10.3b1
Jalview 2.10.3 Webstart Jalview 2.10.3 InstallAnywhere Jalview 2.10.3 Jalview 2.10.3 Applet (Unsupported) Source Tarball for Jalview 2.10.3
Jalview 2.10.2b2 Webstart Jalview 2.10.2b2 InstallAnywhere Jalview 2.10.2b2 Jalview 2.10.2b2 Applet (Unsupported) Source Tarball for Jalview 2.10.2b2
Jalview 2.10.2b1 Webstart Jalview 2.10.2b1 InstallAnywhere Jalview 2.10.2b1 Jalview 2.10.2b1 Applet Source Tarball for Jalview 2.10.2b1
Jalview 2.10.2 Webstart Jalview 2.10.2 InstallAnywhere Jalview 2.10.2 Jalview 2.10.2 Applet Source Tarball for Jalview 2.10.2
Jalview 2.10.1 Webstart Jalview 2.10.1 InstallAnywhere Jalview 2.10.1 Jalview 2.10.1 Applet Source Tarball for Jalview 2.10.1
Jalview 2.10.0 Webstart Jalview 2.10.0 InstallAnywhere Jalview 2.10.0 Jalview 2.10.0 Applet Source Tarball for Jalview 2.10.0
Jalview 2.9 Webstart Jalview 2.9 InstallAnywhere Jalview 2.9 Jalview 2.9 Applet Source Tarball for Jalview 2.9
Jalview 2.8.2b1 Webstart Jalview 2.8.2b1 InstallAnywhere Jalview 2.8.2b1 Jalview 2.8.2b1 Applet Source Tarball for Jalview 2.8.2b1
Jalview 2.8.2 Webstart Jalview 2.8.2 InstallAnywhere Jalview 2.8.2 Jalview 2.8.2 Applet Source Tarball for Jalview 2.8.2
Jalview 2.8.1 Webstart Jalview 2.8.1 InstallAnywhere Jalview 2.8.1 Jalview 2.8.1 Applet Source Tarball for Jalview 2.8.1
Jalview 2.8.0b1 Webstart Jalview 2.8.0b1 InstallAnywhere Jalview 2.8.0b1 Jalview 2.8.0b1 Applet Source Tarball for Jalview 2.8.0b1
Jalview 2.8 Webstart Jalview 2.8 InstallAnywhere Jalview 2.8 Jalview 2.8 Applet Source Tarball for Jalview 2.8
Jalview 2.7 Webstart Jalview 2.7 InstallAnywhere Jalview 2.7 Jalview 2.7 Applet Source Tarball for Jalview 2.7
Jalview 2.6.1 Webstart Jalview 2.6.1 InstallAnywhere Jalview 2.6.1 Jalview 2.6.1 Applet Source Tarball for Jalview 2.6.1
Jalview 2.6 Webstart Jalview 2.6 InstallAnywhere Jalview 2.6 Jalview 2.6 Applet Source Tarball for Jalview 2.6
Jalview 2.5.1 Webstart Jalview 2.5.1 InstallAnywhere Jalview 2.5.1 Jalview 2.5.1 Applet Source Tarball for Jalview 2.5.1
Jalview 2.5 Webstart Jalview 2.5 InstallAnywhere Jalview 2.5 Jalview 2.5 Applet Source Tarball for Jalview 2.5
Jalview 2.4.0b2 Webstart Jalview 2.4.0b2 InstallAnywhere Jalview 2.4.0b2 Jalview 2.4.0b2 Applet Source Tarball for Jalview 2.4.0b2
Jalview 2.4 Webstart Jalview 2.4 InstallAnywhere Jalview 2.4 Jalview 2.4 Applet Source Tarball for Jalview 2.4
Jalview 2.3 Webstart Jalview 2.3 InstallAnywhere Jalview 2.3 Jalview 2.3 Applet Source Tarball for Jalview 2.3