|Pressing F1 in the Jalview Desktop will open the built-in help system, which can also be searched. F1 in JalviewLite will open this page in your browser.|
|How do I edit sequences in Jalview?||A quick guide to mouse and keystroke alignment editing in Jalview 2.|
|The Jalview 2.7 Manual
5MB for on screen
40MB Print Version
This is a comprehensive user manual with exercises, written by David Martin, Jim Procter, Geoff Barton and Andrew Waterhouse.
Old documentation preserved for posterity
Jalview Quickstart Guide
A quick reference for Jalview 2.0 that was produced for its first release in 2005.
Jalview 1.18 Documentation
The original help documentation for Jalview version 1 (published in Clamp et. al 2004). [ just being fixed ;) ]